OpenSWATH - GUI Models
============

The main models used by the GUI are the :class:`.PeptideTree` and the :class:`.DataModel` models

:mod:`MSData Data model` Module
-------------------

Contains classes that provide access to the raw data

MSData
^^^^^^^^^^^^^^

.. autoclass:: openswathgui.models.MSData.DataModel
    :members:
    :undoc-members:
    :show-inheritance:

.. 
    PrecursorModel
    ^^^^^^^^^^^^^^

    .. autoclass:: openswathgui.models.MSData.PrecursorModel
        :members:
        :undoc-members:
        :show-inheritance:


:mod:`TreeModels` Module
-------------------

Contains classes that provide access to the peptide / protein data

TreeNode
^^^^^^^^^^^^^^

.. autoclass:: openswathgui.models.TreeModels.TreeNode
    :members:
    :undoc-members:
    :show-inheritance:

TreeModel
^^^^^^^^^^^^^^

.. autoclass:: openswathgui.models.TreeModels.TreeModel
    :members:
    :undoc-members:
    :show-inheritance:

PeptideTreeNode
^^^^^^^^^^^^^^

.. autoclass:: openswathgui.models.PeptideTree.PeptideTreeNode
    :members:
    :undoc-members:
    :show-inheritance:

PeptideTree
^^^^^^^^^^^^^^

.. autoclass:: openswathgui.models.PeptideTree.PeptideTree
    :members:
    :undoc-members:
    :show-inheritance:


:mod:`SWATH MS Run` Module
-------------------

SingleChromatogramFile
^^^^^^^^^^^^^^

.. autoclass:: openswathgui.models.SingleChromatogramFile.SingleChromatogramFile
    :members:
    :undoc-members:
    :show-inheritance:

SwathRun
^^^^^^^^^^^^^^

.. autoclass:: openswathgui.models.SwathRun.SwathRun
    :members:
    :undoc-members:
    :show-inheritance:

SwathRunCollection
^^^^^^^^^^^^^^

.. autoclass:: openswathgui.models.SwathRunCollection.SwathRunCollection
    :members:
    :undoc-members:
    :show-inheritance:

:mod:`ChromatogramTransition` Module
-------------------

ChromatogramTransition
^^^^^^^^^^^^^^

.. autoclass:: openswathgui.models.ChromatogramTransition.ChromatogramTransition
    :members:
    :undoc-members:
    :show-inheritance: